I want to export certain document fields from several sequences/a list of sequences to a csv file.
In the GUI:
I can mark several sequence documents and export the selected fields to one csv file. But when including an export step in a workflow the file gets overwritten for each sequence. I checked “Export all documents to a single file” and selected “Select these documents when the operation completes” in the previous step that generates the sequence documents. Is there any setting I missed?
I also tried to run the export step on a list of sequences instead, but it seems the sequence list does not have the same fields as the individual sequences.
Using custom java code:
I am using the performOperation method. When using one sequence document I can access for instance:
How can I access this field from all sequences in a sequence list?
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