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Calling an alignment in a test


1 comment

  • Matthew Cheung

    Hi Adrian,

    This is happening because none of the alignment operations have been initialised.  An easy way to fix the test is to initialise all the bundled plugins by replacing:
    TestGeneious.initialize() with TestGeneious.initializeAllBundledPlugins()

    If you want to avoid initialising all of the plugins in your test you can use TestGeneious.initializePlugins("com.biomatters.plugins.clustal.ClustalPlugin", "com.biomatters.plugins.translationalign.TranslationAlignmentPlugin").  You can add any of the plugins you want into that list.

    See for more details.



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