I'm trying out the wrapper plugin development plugin and I have a few questions:
The output of the command line tool is a gff file which should be imported as annotations on the input sequence. Is this possible?
Is there a way to see the actual command line that is being executed? This would be very useful for debugging.
The tool I'm running requires the input file name be the last parameter on the command line. Are the user selectable parameters placed after the command line that is configured in the previous window?
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