I'm trying to use the Wrapper Plugin Creator to make a plugin for a python program that runs through the command line. The program takes as input a CSV exported from a Geneious BLAST consensus results file. According to one of your help pages, the wrapper can accommodate a program which "Accepts input sequences as files on disk in a format that Geneious Prime can export." This would lead me to believe that CSV can be used as the input type, since Geneious can export such files. However, my only choices are .fasta.gz, .fasta, .fastq, .fastq.gz, .gb, .xml, .meg, .nex, .phy. I have the document type selected as "Multiple Alignment (4+ sequences)", but I did try selecting the other options, none of which seemed to have CSV available as a format. Similarly, I tried the different sequence type options to no avail. I have the plugin type selected as "General Operation", as its function is to take the CSV and parse the information in a particular way, creating a new output file sorted in a way that we need for further analysis. If you could advise as to how to select CSV as the input format, I would greatly appreciate it!
Please sign in to leave a comment.