Hi! We routinely use a homemade workflow which creates alignments from amplicon read type Ilumina and calls SNP on these alignments. I sought several paths to automatically summarize and group the alignment results in a report of type .csv. Typically containing: number of reads-reference sequence-SNP-SNP position…. All information needed are generated by the workflow and stored in the alignment files. Having typically 150-300 alignments created by run we seek to automatically generate a summary report. Did I miss an easy way to do this without coding in Java? Is there a possibility to pay for such a plugin to be developed?
Please sign in to leave a comment.