Converting SelectionInterval to SequenceAnnotationGenerator.SelectionRange

Jeff Gentry

• June 27, 2024 15:03

I am looking at converting a SequenceAnnotationGenerator to a DocumentOperation. In an effort to keep the internal changes to a minimum for now, I wanted to first take the `SequenceSelection` passed into `getOptions()` for the DocumentOperation to the corresponding `SequenceAnnotationGenerator.SelectionRange`. And then within my plugin code everything would work as-is.

Let's assume there's only one range selected.

For that one range in the `SequenceSelection`, I can get the `SelectionInterval` for it. And I believe this is what I want to convert to a `SequenceAnnotationGenerator.SelectionRange`. 

Am I right in thinking `Selection.Interval.getMinResidue()` is a 1:1 ma to `SelectionRange.getFirstSelectedResidue`, and `SelectionInterval.getMaxResidue()` maps to `SelectionRange.getLastSelectedResidue`? 

I believe this is the case but want to make sure there aren't assumptions I'm missing.

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  Jeff Gentry

  • June 28, 2024 21:17

  And I see I was wrong. SelectionInterval.getMaxResidue() is exclusive while SelectionRange.getLastSelectedResidue() is inclusive. 
  
  Helps if I could read :) 

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