I've been following the phobos plugin tutorial and things were working, but now Geneious hangs unexpectedly. I am using the 9.0.4 devkit with IntelliJ 15.0.1 on Ubuntu 15.10. I followed the setup.html instructions and was able to test the setup with the 'ExampleDocumentViewerPlugin' and set a breakpoint in the paintComponent method. I then started on the phobos tutorial and was able to copy the 'ExampleAnnotationSequenceGenerator' module with the build file (although I had to make some changes to deal with the two 32 and 64 bit run configuration files).
I then started working through the tutorial and called Geneious successfully several times with the debug command. However, when I tried today, Geneious will launch with the debug command, but as soon as I click on a document, it becomes unresponsive. The console shows Geneious hung at com.biomatters.iseek.license.ag.run. Not sure if this matters, but my main installation is using a trial license.
I also tried to use the build.xml to export the partially-finished phobos plugin as a folder, and copied that folder into my normal Geneious bundledPlugins folder. My normal Geneious started just fine and the plugin was available (although it doesn't really do anything yet).
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