I am trying. to make a simple wrapper plugin using the command line program 'sed'. Basically I am trying to do a simple search and replace on sequences.
My question is how, in the Step 2 window, do I define the file Geneious will be supplying to the program?
From the command line I would enter:
sed 's/CGTGACAATTCCAAAACACCCTGTACTTGCAGA/CGTGACAATTCCAAAAACACCCTGTACTTGCAGA/g' old_file.fasta > new_file.fasta
I need to know what Geneious will be calling new_file.fasta
I hope this is clear!
Please sign in to leave a comment.