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interface with EMBOSS freak command


1 comment

  • Matthew Cheung

    Hi Malcolm,

    The only way to add a graph to Geneious will be to write a plugin.  Unfortunately as you have discovered you cannot do this via the wrapper plugin system.

    You're probably best to start with the ExampleSequenceGraphPlugin in our development kit.  I see you made a post asking about getting things running in Eclipse, so it looks like you may have already started exploring the devkit.

    You mention you only have sparse knowledge of Java.  Do you have any Object Orientated programming experience?  If you do then it shouldn't be too difficult to get a plugin working.

    You'll need to replace the Scorer in the example with your own that runs freak and extracts the value.  You'll need to use the Execution class to run a command line program.



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