Amino acid selection
Hello, I would like to know if there's a way inside Geneious Prime to write code (a macro to be more specific) so the platform automatically selects specifics amino acid sequences within a nucleotide sequence, for different CDRs. If so, can I have a step-be-step on how to do it?
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Hi, if you are annotating CDRs you should take a look at Geneious Biologics. It is a purpose-built solution for antibody analysis and offers a free tier for lower throughput use cases.
To build macros in Geneious Prime, you have a few high level approaches outlined on our API & Customization page. In this case you'd probably use either custom code within Workflows or the plugin development kit.
Both use our Public Java API which offers the ability to annotate sequences according to your own logic (and much more).
If you are writing custom code within Workflows I recommend creating a new workflow with a custom code step and exploring the sample code snippets, especially "Example 3 - Annotate Sequences".
If you prefer to explore plugin development, the plugin development kit includes a sample plugin called "ExampleSequenceAnnotationGenerator" that I recommend you start from.
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