Sorry, its not possible to do 3 sample conditions in RNAseq analysis in Geneious. Only 2 sample with replicates is currently possible.
Running more than 2 conditions in DeSeq2
I am trying to set up an expression analysis between 3 different sample strains from my RNA-seq experiment that were also taken at 3 different timepoints. I have 3 biological replicates for each, so 27 samples in total. Currently, I can see that I can only run DeSeq2 on 2 conditions only - is there a way to do more than 2 and how?
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