Workflow for NGS

Kimberly Zitnick

• February 16, 2022 15:04

Hi! I currently have the latest version of Geneious Prime and am trying to develop a workflow. The workflow works well until I try to extract amplicon sequences that have been trimmed and merged. I want to add a step in the workflow that allows me to extract sequences while defining the length of the sequence. As far as I know there are only four extraction step options and none of the options allow for the user to define the sequence length. Can anyone help me figure this out? 

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  Hilary Miller

  • February 17, 2022 01:51

  Hi Kimberly

  You can do this using the "filter" option in Workflows - select "Filter Documents" from the Add Step, and set it up as in the screenshot below:

  

  Make sure you choose to apply to "Each sequence" not each document.  

  To make it so that you can set the length when you run the workflow you'll have to choose "expose all options" in the setup. 

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