How do I develop a workflow to process NGS metagenomic data similiar to the process highlighted in the Metagemonic analysis Video Series? I am currently trying to develop one for large sets of amplicon data and so far many of the options listed in the video aren't even options in the workflow process. I have tried to perform the process step by step but am not able to get results. Could someone please help me develop a proper workflow to process hundreds of samples?
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