Does the PAUP* plugin work with the new alpha version?

The Geneious PAUP* plugin ( provides an interface for running PAUP* but you must obtain your own copy of the PAUP* program.  

The plugin works with commercial releases of PAUP* up to and including version PAUP* 4.0b10†, which used to be available from Sinnauer Associates.  It also works with the latest alpha "test version" command line binaries, available from  You must be using latest version (PAUP*4.0a166 as of Oct 2019) with Geneious PAUP* plugin version 1.3.1 or above. 

† Note that PAUP* 4.0b10 is a 32-bit executable and is not supported on MacOS Catalina (10.15).


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