What dyes does Geneious Prime recognise? June 16, 2020 21:43 Geneious will pick up whatever dye(s) are listed in the microsatellite trace file. The last dye is assumed to be the ladder. Related articles Geneious Prime prompts me to remove a bad (250bp) peak? Getting started with microsatellites in Geneious Prime Can I use a custom microsatellite ladder? What is the gray area at the start of the traces? Can I set the ploidy of the data?