Many Geneious features are available as plugins and are not automatically installed in Geneious (eg, Sequence Classifier, MAFFT aligner, Genbank submission, MrBayes and other tree builders).
Geneious plugins can be installed via the plugins menu in Geneious (Tools → Plugins).
Many of the new plugins in Geneious are experimental plugins. These are plugins which have been developed by users in the Geneious community (eg Augustus, FLASH, SeqPartioner etc).
Experimental plugins are not available through the plugins menu in Geneious but can be downloaded from the plugins page on our website. To install a plugin in Geneious, download the plugin as .gplugin file from our website and drag and drop the file into Geneious.