A wide range of different formats are compatible for import including DNAStar Lasergene, SnapGene and VectorNTI data.
Smart NGS file importing allows drag and drop of any assortment of SAM, BAM, GFF, BED, and VCF files into Geneious to import in one easy step, even if you have a mixture of different samples and reference sequences.
A full list of supported formats can be found here.